Publications

Citation indices (For latest citations Google Scholar Profile)

Citations: ~1900                           

H-index: 17

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Since joining IISER, Pune

44. Karyakarte RP, Das R, Rajmane MV, Dudhate S, Agarasen J, Pillai P, Chandankhede PM, Labhshetwar RS, Gadiyal Y, Kulkarni PP, Nizarudeen S, Joshi S, Karmodiya K, Potdar V (2023) Chasing SARS-CoV-2 XBB.1.16 Recombinant Lineage in India and the Clinical Profile of XBB.1.16 Cases in Maharashtra, India. Cureus. 2023 Jun 1;15(6):e39816.

 

43. Niveditha D, Khan S, Khilari A, Nadkarni S, Shah N, Kadam P, Sawant R, Bhalerao U, Nagar D, Rao AG, Tupekar M, Yadav R, Thakur S, Likhitkar B, Kanekar JB, Jagtap R, Jogi S, Belekar M, Pathak M, Shah P, Ranade S, Phadke N, Das R, Joshi S, Karyakarte R, Ghose A, Kadoo N, Shashidhara LS, Monteiro JM, Shanmugam D, Raghunathan A*, Karmodiya K* (2023) A Tale Of Two Waves: Diverse Genomic And Transmission Landscapes Over 15 Months Of The COVID19 Pandemic In Pune, India. Journal of Infection and Public Health. 16 (8), 1290-1300.

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42. Choubey D, Deshmukh B, Rao AG, Kanyal A, Hati AK, Roy S, Karmodiya K (2023) Genomic analysis of Indian isolates of Plasmodium falciparum: Implications for drug resistance and virulence factors. Int J Parasitol Drugs Drug Resist. 2023 Aug;22:52-60.

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41. Borse R, Karyakarte RP, Das R, Yanamandra S, Salvi S, Bhitkar H, Mundhe S, Ogale D, Radewad N, Joshi S, Karmodiya K (2023) Clinical Characteristics of SARS-CoV-2 Omicron Cases in Pune, Maharashtra, India. Cureus. 2023 Apr 2;15(4):e37032. 

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40. Karyakarte R, Das R, Dudhate S, Agarasen J, Pillai P, Chandankhede P, Labshetwar R, Gadiyal Y, Rajmane M, Kulkarni P, Nizarudeen S, Joshi S, Karmodiya K (2023) Clinical Characteristics and Outcomes of Laboratory-Confirmed SARS-CoV-2 Cases Infected with Omicron subvariants and XBB recombinant variant. Cureus. 21;15(2):e35261.

39. Meena CL, Hingamire T, Gupta T, Deshmukh B, Karmodiya K, Joshi R, Shanmugam D, Sanjayan GJ (2023) Histidinal-Based Potent Antimalarial Agents. ChemMedChem. 18(9):e202200709.
 

38. Dave B, Kanyal A, Mamatharani DV, Karmodiya K (2022) Pervasive sequence-level variation in the transcriptome of Plasmodium falciparum, NAR Genom. Bioinform., 4(2): lqac036.  
 

37. Rawat M, Kanyal A, Choubey D, Deshmukh B, Malhotra R, Mamatharani DV, Rao AG, Karmodiya K (2022) Identification of Co-Existing Mutations and Gene Expression Trends Associated with K13-Mediated Artemisinin Resistance in Plasmodium falciparum. Front. Genet., 13:824483. 
 

36. Sethumadhavan DV, Tiburcio M, Kanyal A, Jabeena CA, Govindaraju G, Karmodiya K, Rajavelu A (2022) Chromodomain protein interacts with H3K9me3 and controls RBC rosette formation by regulating the expression of a subset of RIFINs in the malaria parasite. J. Mol. Biol., 434(12):167601. 
 

35. Ray A, Mathur M, Choubey D, Karmodiya K, Surolia N (2022) Autophagy Underlies the Proteostasis Mechanisms of Artemisinin Resistance in P. falciparum Malaria. mBio., 14:e0063022. 
 

34. Labade AS, Salvi A, Kar S, Karmodiya K, Sengupta K (2021) Nup93 and CTCF modulate spatiotemporal dynamics and function of the HOXA gene locus during differentiation. J. Cel. Sci.,134(23):259307.
 

33. Ozarkar A, Kanyal A, Dass S, Deshpande P, Deobagkar D, Karmodiya K (2021) Analysis of drug resistance marker genes of Plasmodium falciparum after implementation of artemisinin-based combination therapy in Pune district, India. J Biosci. 46:77.

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32. Karuppusamy B, Sarma DK, Lalmalsawma P, Pautu L, Karmodiya K, Nina (2021) Effect of climate change and deforestation on vector borne diseases in the North-Eastern Indian state of Mizoram bordering Myanmar. The Journal of Climate Change and Health, e100015. 

 

31. Rawat M, Srivastava A, Gupta I, Karmodiya K (2021) Single Cell RNA-sequencing reveals cellular heterogeneity, stage transition and antigenic variation during stress adaptation in synchronized Plasmodium falciparum. Microbiol Spectr. 2021 Sep 3;9(1):e0000821.

 

30. Jabeena CA, Govindaraju G, Rawat M, Gopi S, Sethumadhavan DV, Jaleel A, Sasankan D, Karmodiya K, Rajavelu A (2021) Dynamic association of the H3K64 trimethylation mark with genes encoding exported proteins in Plasmodium falciparum. J Biol Chem. 296:100614

 

29. Rawat M, Kanyal A, Sahasrabudhe A, Vembar SS, Lopez-Rubio JJ, Karmodiya K (2021) PfGCN5, a global regulator of stress responsive genes, modulates artemisinin resistance in Plasmodium falciparum. Sci Rep. 11(1):852.

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28. Rawat M*, Malhotra R*, Shintre S, Pani S, Karmodiya K (2020) Role of PfGCN5 in nutrient sensing and transcriptional regulation in Plasmodium falciparum. J. Biosci, 45 (202):11. (* Equal contribution)

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27. Reddy PC, Pradhan, SJ, Karmodiya K*, Galande S* (2020) Origin of RNA Polymerase II pause in eumetazoans: insights from Hydra. J. Biosci, 45 (202):8. (*corresponding authors)

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26. Chaudhari MB, Mohanta N, Pandey AM, Vandana M, Karmodiya K, Gnanaprakasam B (2019) Peroxidation of 2-oxindole and barbituric acid derivatives under batch and continuous flow using an eco-friendly ethyl acetate solvent. React. Chem. Eng., 4, 1277.

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25. Bisht GS, Pandey AM, Chaudhari MB, Agalave SG, Kanyal A, Karmodiya K, Gnanaprakasam B (2018) Ru-Catalyzed dehydrogenative synthesis of antimalarial arylidene oxindoles. Org. Biomol. Chem., 16(39): 7223-7229.

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24. Kanyal A, Rawat M, Gurung P, Choubey D, Anamika K, Karmodiya K (2017) Genome-wide survey and phylogenetic analysis of histone acetyltransferases and histone deacetylases of Plasmodium falciparum. FEBS J. 2017 Dec 28.

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23. Muralidharan B, Keruzore M, Pradhan SJ, Roy B, Shetty AS, Kinare V, D'Souza L, Maheshwari U, Karmodiya K, Suresh A, Galande S, Bellefroid EJ, Tole S (2017) Dmrt5, a Novel Neurogenic Factor, Reciprocally Regulates Lhx2 to Control the Neuron-Glia Cell-Fate Switch in the Developing Hippocampus. J Neurosci. 2017 Nov 15;37(46):11245-11254.

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22. Ubhe S, Rawat M, Verma S, Anamika K, Karmodiya K (2017) Genome-wide identification of novel intergenic enhancer-like elements: implications in the regulation of transcription in Plasmodium falciparum. BMC Genomics, 23;18(1):656.

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21. Meesala S, Gurung P, Karmodiya K, Subrayan P, Watve MG (2017) Isolation and structure elucidation of halymeniaol, a new antimalarial sterol derivative from the red alga Halymenia floresii. J Asian Nat Prod Res. 1-8.

20. Muralidharan B, Khatri Z, Maheshwari U, Gupta R, Roy B, Pradhan SJ, Karmodiya K, Padmanabhan H, Shetty AS, Balaji C, Kolthur-Seetharam U, Macklis JD, Galande S, Tole S (2017) LHX2 Interacts with the NuRD Complex and Regulates Cortical Neuron Subtype Determinants Fezf2 and Sox11. J Neurosci. 37(1):194-203.

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19. Labade AS, Karmodiya K, Sengupta K (2016) HOXA repression is mediated by nucleoporin Nup93 assisted by its interactors Nup188 and Nup205. Epigenetics and Chromatin, 9:54. 

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18. Rawat M, Bhosale MA, Karmodiya K (2016) Plasmodium falciparum epigenome: A distinct dynamic epigenetic regulation of gene expression. Genomics Data, 7, 79-81.

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17. Karmodiya K*, Pradhan SJ, Joshi B, Jangid R, Reddy PC, Galande S (2015) A comprehensive epigenome map of Plasmodium falciparum reveals unique mechanisms of transcriptional regulation and identifies H3K36me2 as a global mark of gene suppression. Epigenetics and Chromatin, 8:32. (*corresponding author).

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16. Karmodiya K*, Anamika K, Muley V, Pradhan SJ, Bhide Y, Galande S (2014) Camello, a novel family of Histone Acetyltransferases that acetylate histone H4 and is essential for zebrafish development. Scientific Reports 4:6076. (*corresponding author).

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From Post-doctoral Research, Strasbourg, France

15. Karmodiya K, Krebs AR, Oulad-Abdelghani M, Kimura H, Tora L (2012) H3K9 and H3K14 acetylation co-occur at many gene regulatory elements, while H3K14ac marks a subset of inactive inducible promoters in mouse embryonic stem cells. BMC Genomics. 13(1):424.

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14. Krebs AR*, Karmodiya K*, Lindhal-Allen M,  Struhl K, Tora L (2011) SAGA and ATAC histone acetyl transferase complexes target distinct sets of genes and ATAC defines a class of p300 independent enhancers. Molecular Cell, 44(3):410-23. (*Equal contribution).

 

13. Lang G*, Bonnet J*, Umlauf D, Karmodiya K, Koffler J, Stierle M, Devys D, Tora L (2011) The tightly controlled deubiquitination activity of the human SAGA complex differentially modifies distinct gene regulatory elements. Mol Cell Biol. 31:3734-3744. (*Equal contribution)

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12. Krebs AR, Demmers J, Karmodiya K, Chang NC, Chang AC, Tora L (2010) ATAC and Mediator coactivators form a stable complex and regulate a set of non-coding RNA genes. EMBO Rep. 11:541-547.

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From Ph.D., JNCASR, Bangalore

11. Karmodiya K, Modak R, Sahoo N, Sajad S, Surolia N (2008) Deciphering the key residues in Plasmodium falciparum beta-ketoacyl acyl carrier protein reductase responsible for interactions with Plasmodium falciparum acyl carrier protein. FEBS J. 275:4756-4766.

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10. Mishra S, Karmodiya K, Parasuraman P, Surolia A, Surolia N (2008) Design, synthesis and application of novel triclosan prodrugs as potential antimalarial and antibacterial agents. Bioorg Med Chem. 16:5536-5546.

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9. Mishra S, Karmodiya K, Surolia N, Surolia A (2008) Synthesis and exploration of novel curcumin analogues as antimalarial agents. Bioorg Med Chem. 16:2894-902.

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8. Karmodiya K, Surolia N (2008) A unique and differential effect of denaturants on co-factor mediated activation of Plasmodium falciparum beta-ketoacyl-ACP reductase. Proteins. 70:528-538.

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7. Karmodiya K*, Sajad S*, Sinha S*, Maity K*, Suguna K, Surolia N (2007) Conformational stability and thermodynamic characterization of homotetrameric P. falciparum beta-Ketoacyl-ACP reductase. IUBMB Life. 59:441-449. (*Equal contribution)

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6. Sharma S, Sharma SK, Modak R, Karmodiya K, Surolia N, Surolia A (2007) Mass spectrometry-based systems approach for identification of inhibitors of Plasmodium falciparum fatty acid synthase. Antimicrob Agents Chemother. 51:2552-2558.

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5. Kumar G, Parasuraman P, Sharma SK, Banerjee T, Karmodiya K, Surolia N, Surolia A. (2007) Discovery of a rhodanine class of compounds as inhibitors of Plasmodium falciparum enoyl-acyl carrier protein reductase. J Med Chem. 50:2665-2675.

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4. Ramya TN, Karmodiya K, Surolia A, Surolia N (2007) 15-deoxyspergualin primarily targets the trafficking of apicoplast proteins in Plasmodium falciparum. J Biol Chem. 282:6388-6397.

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3. Ramya TN, Mishra S*, Karmodiya K*, Surolia N, Surolia A (2007) Inhibitors of Non-Housekeeping Functions of the Apicoplast Defy 'Delayed Death' in Plasmodium falciparum. Antimicrob Agents Chemother. 51:307-316. (*Equal contribution)

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2. Karmodiya K, Surolia N (2006) Analyses of co-operative transitions in Plasmodium falciparum beta-ketoacyl acyl carrier protein reductase upon co-factor and acyl carrier protein binding. FEBS J.  273:4093-4103.

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1. Karmodiya K, Srivastav RK, Surolia N (2005) Production and purification of refolded recombinant Plasmodium falciparum beta-ketoacyl-ACP reductase from inclusion bodies. Proetin Exp. Puri. 42:131-136.

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Book Chapters

1. Kanyal A, Nahta S and Karmodiya K (2019) Epigenetics in Infectious Disease, Prognostic Epigenetics, Volume 15, Elsevier

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